Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs144860043 | chr17:57375753 | C/T | 3.82E-9 | 480 | 15.9 | 15.9 | 16.98 | KM Plot |
| THCA | rs144938608 | chr1:16190726 | C/T | 0.000185 | 485 | 15.27 | 17.33 | 17.77 | KM Plot |
| THCA | rs145029792 | chr6:24433878 | G/A | 6.38E-7 | 478 | 16.37 | 14.9 | 9.25 | KM Plot |
| THCA | rs145049246 | chr3:19962787 | TGA/T | 1.35E-6 | 478 | 15.9 | 16.8 | 11.52 | KM Plot |
| THCA | rs145062782 | chr13:108910836 | C/T | 2.42E-9 | 481 | 15.28 | 17.95 | 14.67 | KM Plot |
| THCA | rs145180160 | chr1:91835942 | G/A | 7.73E-6 | 490 | 15.67 | 17 | 17.77 | KM Plot |
| THCA | rs145187177 | chr3:127637321 | C/T | 0 | 490 | 16.27 | 15 | 6.03 | KM Plot |
| THCA | rs145217021 | chr2:48062761 | G/A | 1.14E-7 | 487 | 15.3 | 17.93 | 8.27 | KM Plot |
| THCA | rs145226820 | chr14:36267078 | C/CT | 5.08E-6 | 490 | 16.08 | 15.98 | 8.33 | KM Plot |
| THCA | rs145229491 | chr3:53935521 | TA/T | 3.89E-15 | 490 | 15.9 | 16.77 | 10.35 | KM Plot |
| THCA | rs145296008 | chr19:43603242 | T/A | 2.19E-11 | 486 | 15.3 | 18.93 | 2.4 | KM Plot |
| THCA | rs145343881 | chr2:196750274 | ATAAGT/A | 5.42E-8 | 485 | 15.9 | 16.07 | 12.08 | KM Plot |
| THCA | rs145404067 | chr19:43549564 | C/T | 5.85E-5 | 487 | 15.32 | 17.77 | 10.08 | KM Plot |
| THCA | rs145412544 | chr3:53908012 | C/T | 6.88E-15 | 482 | 16.13 | 16.77 | 10.35 | KM Plot |
| THCA | rs145549970 | chr19:43598081 | C/A | 0.000224 | 486 | 15.48 | 18.03 | 10.08 | KM Plot |